Protein Pancake Muffins

12 Muffins90 cals

Lately we’ve done a bunch of meal preps and quick desserts. Today, we’re going to keep the quick, make it somewhat of a meal prep, and give you choice! These Protein Pancake Muffins can be made sweet or savory, are great to make in bulk, and are macro-balanced. If you’re looking for something easy you can take with you in the morning, these are definitely worth a try!

Speaking of sweet or savory, what’s your preference? A nice steak or the best cake of your life? Drop it below.

The first step is to decide if you’re using cottage cheese or Greek yogurt. If you want to use cottage cheese instead of Greek yogurt, give 6 ounces of it a quick whip in a blender or food processor until smooth.

From here, take out a mixing bowl and add right into it, 6 ounces of Greek yogurt or your whipped cottage cheese, 2 large whole eggs, 4 ounces of milk or milk substitute, 2 tablespoons of melted butter or coconut oil, 2 scoops of protein powder, and the magic ingredient? A cup of a pancake mix!

Pro tip? Use a regular pancake mix, not a “high” protein one unless you want burnt tops!

No pancake mix? Make your own! You can easily scale this multiple times over and keep it stored in an airtight container so you always have some ready to go.

Homemade Pancake Mix

  • 1 Cup All Purpose Flour
  • 1-2 Tablespoons Sweetener
  • 1 Teaspoon Baking Powder
  • 1/2 Teaspoon Baking Soda
  • 1/4 Teaspoon Salt
  • 2 Tablespoons Buttermilk Powder *Optional

Let’s talk about flavors. If you’re going savory, use plain Greek yogurt and unflavored protein powder. Add in things like cooked lean ground beef, turkey, or sausage, deli ham, bacon bits, shredded cheese, bell peppers, spinach, chives, garlic or onion powder, various seasonings, the list is endless. Here are some of my favorite savory combinations:

Savory Pancake Muffins

  • Cheddar & Chive: 1/2 Cup Shredded Cheddar Cheese, 2 Tablespoons Chives, 1 Teaspoon Garlic Powder or less (Optional)
  • Bacon Jalapeño: 2-3 Tablespoons Bacon Bits (or cooked crumbled bacon), 1-2 diced Jalapeños, 1/2 Cup Shredded Pepper Jack Cheese, 1/2 Teaspoon Smoked Paprika
  • Everything: 1/2 Cup Shredded Mozzarella Cheese, 1/2 Cup chopped Spinach, 3 Ounces cooked crumbled Sausage, 1 Tablespoon Everything Seasoning

For sweet muffins, use a flavored Greek yogurt and protein powder that both complement each other. Add in a sweetener or some honey, vanilla extract, chopped up fruit, nuts, sugar free chocolate chips, and so on. Here are some of my favorite sweet combinations:

Sweet Pancake Muffins

  • Banana Chocolate Chip: 1 mashed Banana (into the mix), 2 Tablespoons Sugar Free Chocolate Chips, 1 Teaspoon Ground Cinnamon or less (Optional)
  • PB & Strawberry: 2 Tablespoons Peanut Butter, 1/3 Cup diced Strawberries
  • Cinnamon Apple: 1/2 Cup diced Apple, 1 Teaspoon Ground Cinnamon, 1-2 Tablespoons Maple Syrup

Continue by mixing all your ingredients together right until smooth. Don’t over-mix, that’s the enemy of a good protein pancake muffin here! If you want a “filling” for them, you can lightly mix that in after or my preference? When you top them.

Evenly distribute your mix into a coated muffin pan or silicone cups and top them with anything you might want. Alternatively, as you’re topping them you can lightly “mix” the add-in into your muffin. Doing it this way will give you more ingredient distribution throughout the muffin versus everything sinking to the bottom of the mixing bowl.

Last, put them into the oven on 325F/162C for 15-18 minutes depending on the size protein pancake muffins you’re making. In silicone cups, that’s how long they take me. If you’re making mini or jumbo protein pancake muffins, they’ll obviously take less or more time.

Oven Calibration

Circling back to burnt tops. If that happens, throw them on the bottom rack for next time or turn your oven down a bit. If you’ve never checked your ovens calibration, it might run a bit hot. I usually check mine once a year and I’ve had the same oven calibration tool for over 10 years which I’ll link to below.

Store these protein pancake muffins in the fridge where they should last around 5-7 days depending on what you put inside them.

Ready for a High Protein Pasta Sauce recipe next!?

How much protein is in protein pancake muffins?

Protein content varies based on your ingredients, but each muffin typically contains 8–12g of protein when made with 2 scoops of protein powder (roughly 40–50g protein total) plus 6 ounces of Greek yogurt or cottage cheese. Using a high-protein add-in like cooked ground turkey or sausage can push individual muffins to 15g+ per serving.

Can you meal prep protein pancake muffins?

Yes. Protein pancake muffins are ideal for meal prep. Store them in an airtight container in the refrigerator for 5–7 days. For longer storage, freeze them individually for up to 3 months and reheat in the microwave for 30–60 seconds.

Can you make protein pancake muffins without protein powder?

Yes. Replace the protein powder with an equal volume of additional pancake mix or flour. To compensate for lost protein, increase your Greek yogurt or cottage cheese to 8 ounces, or add an extra egg. Note that skipping protein powder will greatly reduce the protein content per muffin by approximately 4–6g.

Why are my protein pancake muffin tops burning?

Burnt tops are most commonly caused by using a high-protein pancake mix or an uncalibrated oven running hot. Switch to a standard pancake mix, move your muffin pan to the bottom oven rack, and reduce temperature by 10–25°F. Always bake at 325°F (162°C) and check doneness at the 15-minute mark.

What is the best pan for baking protein pancake muffins?

Silicone muffin cups are recommended for protein pancake muffins. They release easily without sticking, require no greasing, and produce evenly baked muffins in 15–18 minutes at 325°F (162°C). A standard metal muffin pan also works when coated with non-stick spray, but silicone reduces cleanup and lowers the risk of overbrowning on the edges.

Protein Pancake Muffins Recipe

Protein Pancake Muffins

Pancakes or muffins? Make both in 5 minutes or less! These sweet or savory and easy to make Protein Pancake Muffins are delicious!
5 from 1 vote
Print Pin Rate Save Recipe
Prep Time: 5 minutes
Cook Time: 18 minutes
Total Time: 23 minutes
Course: Breakfast
Cuisine: American
Keyword: pancake muffins, protein muffins, protein pancake muffins, savory muffins
Servings: 12 Muffins
Calories: 90kcal
Cost: $2

The Protein Chef is a participant in the Amazon Services LLC Associates Program, an affiliate advertising program designed to provide a means for us to earn fees by linking to Amazon.com and affiliated sites. As an Amazon Associate, I earn from qualifying purchases.

Ingredients

  • 6 Ounces Greek Yogurt - or Cottage Cheese (Unflavored for Savory or Flavored for Sweet)
  • 2 Large Whole Eggs
  • 4 Ounces Milk - or Milk Substitute (Almond, Coconut, Cashew)
  • 2 Tablespoons Butter - or Coconut Oil (Melted)
  • 2 Scoops Protein Powder - Unflavored for Savory or Flavored for Sweet (Must complement your Greek Yogurt)
  • 1 Cup Pancake Mix - Regular + Low Sugar (Not High Protein)

Sweet Protein Pancake Muffin Add-Ins (Mix & Match!)

  • 1 Banana - Chopped or Mashed in
  • ½ Cup Blueberries
  • ½ Cup Apple - Diced
  • Cup Strawberries - Diced
  • 1 Teaspoon Vanilla Extract
  • 1 Teaspoon Ground Cinnamon
  • 1-2 Tablespoons Honey - Syrup, or Sweetener
  • 3 Tablespoons Cocoa Powder
  • 2 Tablespoons Nut Butter
  • 2 Tablespoons Chocolate Chips - or Other Chips (Sugar Free)

Savory Protein Pancake Muffins Add-Ins (Mix & Match!)

  • ½ Cup Cheese - Shredded (Cheddar, Mozzarella, Feta)
  • ½ Onion - Chopped
  • 1-2 Jalapeños - Diced
  • 2 Tablespoons Chives
  • 1 Bell Pepper - Chopped
  • ½ Cup Spinach - Chopped
  • 3 Ounces Sausage - Cooked
  • 3 Ounces Deli Ham
  • 3 Ounces Ground Beef - or Turkey (Cooked)
  • 2-3 Tablespoons Bacon Bits
  • 1 Teaspoon Garlic Powder
  • ½ Teaspoon Onion Powder
  • ½ Teaspoon Paprika - Smoked
  • 1 Tablespoon Everything Seasoning

Instructions

  • Using Cottage Cheese? Whip it in a blender or food processor until smooth
  • Melt your Butter or Coconut Oil and add everything aside from your "Add-Ins" into a mixing bowl
  • Mix everything together right until smooth, be careful not to over-mix
  • Evenly distribute your mix into a coated muffin pan or silicone cups
  • Top or lightly mix into them whatever you want (your add-ins)
  • Put them into the oven on 325F/162C for 15-18 minutes
  • Tops burning? Put them on the bottom rack for next time or drop your temp!

Video

Notes

Whole Recipe w/ No Add-Ins:
  • Calories: 1087
  • Fat: 35g
  • Saturated Fat: 17g
  • Sodium: 1710mg
  • Carbs: 99g
  • Fiber: 2g
  • Sugar: 14g
  • Protein: 94g
 
Per Muffin (If you make 12):
  • Calories: 90
  • Fat: 2.9g
  • Saturated Fat: 1.4g
  • Sodium: 142.5mg
  • Carbs: 8.2g
  • Fiber: .1g
  • Sugar: 1.1g
  • Protein: 7.8g

Nutrition

Calories: 90kcal | Carbohydrates: 8.2g | Protein: 7.8g | Fat: 2.9g | Saturated Fat: 1.4g | Sodium: 142.5mg | Fiber: 0.1g | Sugar: 1.1g

1 Comment

  1. Ben Pellor on April 16, 2026 at 5:45 pm

    5 stars
    Made this tonight with only a little sweetener to satisfy my dessert cravings and ended up eating them all dunked in some Maple Grove. I’ll try them with some fresh bacon and cheddar this weekend. Thank you

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